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  • 16:01, 13 May 2019 Ppomorsk (Talk | contribs) moved page Exploring Octave package dataframe to Webinar 2019 Exploring Octave package dataframe
  • 16:01, 13 May 2019 Ppomorsk (Talk | contribs) moved page PRE and POST production on Graham to Webinar 2019 PRE and POST production on Graham
  • 13:37, 13 May 2019 Ppomorsk (Talk | contribs) automatically marked revision 17838 of page GPU Accelerated Computing patrolled
  • 13:34, 13 May 2019 Ppomorsk (Talk | contribs) deleted page CONVERGE (content was: "{{Software |package_name=CONVERGE |package_description=CFD Code Using the AMR Mesh Generation Technique |package_idnumber=154 }} =Introduction= A converge module is made available on sharcnet to run large jobs in the mpi queue. =Versi...")
  • 13:33, 13 May 2019 Ppomorsk (Talk | contribs) deleted page CaMa-Flood (content was: "{{Template:GrahamUpdate}} The CaMa-Flood (Catchment-based Macro-scale Floodplain) model is designed to simulate the hydrodynamics in continental-scale rivers. ==CaMa-Flood v3.6.2 installation guide== To build this software on SHARCNET,...")
  • 13:33, 13 May 2019 Ppomorsk (Talk | contribs) deleted page CPAN (content was: "{{Template:LegacyPage}} {{Software |package_name=CPAN |package_description=The Comprehensive Perl Archive Network|package_idnumber=169 }} =Introduction= A meta module providing an updated version of the Cpan shell. =Version Selection=...")
  • 13:32, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Caret (content was: "=6.0.78= Below steps tested on orca running centos 6.9 by doug@sharcnet.ca on Feb 21, 2018.<br> <pre> ssh orca.sharcnet.ca [roberpj@orc-login1:~] ssh orc-dev3..." (and the only contributor was "Roberpj"))
  • 13:30, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Programming Xeon Phi (content was: " =The Architecture= Xeon Phi is the first Intel Many Integrated Core (MIC) architecture product that combines many Intel CPU cores onto a single chip. The Xeon Phi co-processor can be considered as an on-chip computing node which has 60(...")
  • 13:29, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Pyomo (content was: "== Introduction == Pyomo is a Python-based open-source software package that supports a diverse set of optimization capabilities for formulating, solving, and an..." (and the only contributor was "Jnandez"))
  • 13:29, 13 May 2019 Ppomorsk (Talk | contribs) deleted page NWCHEM (content was: "{{Software |package_name=NWCHEM |package_description=A computational chemistry package |package_idnumber=12 }} ==Introduction== NWChem is a computational chemistry package that is designed to run on high-performance parallel supercompute...")
  • 13:28, 13 May 2019 Ppomorsk (Talk | contribs) deleted page MPFUN (content was: "{{Template:LegacyPage}} {{Software |package_name=MPFUN |package_description=A Fortran-90 arbitrary precision package |package_idnumber=16 }} ===Introduction=== MPFUN90 is a Fortran-90 arbitrary precision package (i.e. user specifies the...")
  • 13:28, 13 May 2019 Ppomorsk (Talk | contribs) deleted page MODE (content was: "{{Template:LegacyPage}} {{Software |package_name=MODE |package_description=Lumerical MODE provides tools for guided and eigenmode expansion (EME) solver |package_idnumber=162 }} =Introduction= Provides mode software for use by research...")
  • 13:27, 13 May 2019 Ppomorsk (Talk | contribs) deleted page TRINITY (content was: "<!--checked2016--> {{Template:GrahamUpdate}} =2.0.6= This document provides test and build instructions for http://trinityrnaseq.github.io/ provided by doug@sharcnet.ca 17jun2015: 1) Demonstrate howto use the 'unsupported' sharcnet bui...")
  • 13:27, 13 May 2019 Ppomorsk (Talk | contribs) deleted page PETSC SLEPC (content was: "<!--checked2016--> {{Software |package_name=PETSC_SLEPC |package_description=A suite of data structures and routines for the scalable (parallel) solution of scientific applications modeled by partial differential equations |package_idnum...")
  • 13:26, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Pymol (content was: "{{GrahamUpdate}} ==Pymol on new Compute Canada systems (cedar and graham)== Pymol can be installed through Anaconda (see [https://docs.computecanada.ca/wiki/Anaconda/en Anaconda page] on docs.computecanada.ca for more details). First,...")
  • 13:25, 13 May 2019 Ppomorsk (Talk | contribs) deleted page PARI/GP (content was: "{{Software |package_name=PARI/GP |package_description=A computer algebra system designed for fast computations in number theory |package_idnumber=93 }} <b>Introduction</b> Please note PARI/GP is a package installed as part of the opera...")
  • 13:24, 13 May 2019 Ppomorsk (Talk | contribs) deleted page LLVM (content was: "{{Software |package_name=LLVM |package_description=The LLVM Compiler Project with Sub-Projects Clang,Openmp,Polly |package_idnumber=185 }} =Version Selection= <..." (and the only contributor was "Roberpj"))
  • 13:24, 13 May 2019 Ppomorsk (Talk | contribs) deleted page JULIA (content was: "{{Template:GrahamUpdate}} {{stub}} =versions and installation= ==0.6.2== The following two commands will (1) download the Julia binary from the website (julialang.org) as a tar file, and (2) extract the tar file. The target directory...")
  • 13:22, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Winsshfs (content was: "#REDIRECT SSHFS" (and the only contributor was "Edward"))
  • 13:22, 13 May 2019 Ppomorsk (Talk | contribs) deleted page YT (content was: "{{Template:GrahamUpdate}} {{Software |package_name=Yt |package_description=Visualization |package_idnumber=151 }} ==Introduction== The yt project is a Python package for analyzing and visualizing volumetric, multi-resolution astrophysic...")
  • 13:22, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Yambo (content was: "{{Template:GrahamUpdate}} Jemmy Hu, Oct. 18, 2016 Steps to build Yambo on Sharcnet 1) using the default the environment settings [jemmyhu@saw-login1:~/work/software/yambo/4.0.4] module list Currently Loaded Modulefiles: 1) torque/...")
  • 13:21, 13 May 2019 Ppomorsk (Talk | contribs) deleted page XCRYSDEN (content was: "{{Software |package_name=XCRYSDEN |package_description=Visualization software |package_idnumber=94 }} = XCrySDen on Cedar and Graham= On cedar and graham XCrySDen is installed as a module. To use it, connect with the graphical interfa...")
  • 13:20, 13 May 2019 Ppomorsk (Talk | contribs) deleted page SeqAn (content was: "{{Template:GrahamUpdate}} =Software Information= SeqAn is an open source C++ library of efficient algorithms and data structures for the analysis of sequences with the focus on biological data. * URL: http://www.seqan.de/ * Downloads:...")
  • 13:19, 13 May 2019 Ppomorsk (Talk | contribs) deleted page ILOGCPLEX (content was: "{{Template:GrahamUpdate}} {{Software |package_name=ILOGCPLEX |package_description=A component of IBM ILOG CPLEX Optimization Studio |package_idnumber=109 }} =Introduction= Users must join first the <i>ilogcplex</i> group before the sof...")
  • 12:38, 13 May 2019 Ppomorsk (Talk | contribs) deleted page OPENMPI (content was: "{{Software |package_name=OPENMPI |package_description=Implementation of MPI-1 and MPI-2 message passing standards |package_idnumber=5 }} =Compute Canada Clusters= The default module version of OpenMPI on cedar, graham and new-orca is v...")
  • 12:35, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Wise2/Genewise (content was: "This software is related to ticket 24610[https://www.sharcnet.ca/my/problems/ticket/24610] and ticket 25036[https://www.sharcnet.ca/my/problems/ticket/25036] To build wise2, you should start with unzipping the tar file, then the "glib-c...")
  • 12:35, 13 May 2019 Ppomorsk (Talk | contribs) deleted page YAML-CPP (content was: "{{LegacyPage}} =0.5.2= The following installation instructions are based on https://github.com/jbeder/yaml-cpp/blob/master/install.txt Apr27,2015 <doug@sharcnet.ca>: ===System Installs=== Both yamp-cpp and yamp-cpp-devel repository...")
  • 12:32, 13 May 2019 Ppomorsk (Talk | contribs) deleted page Transposome (content was: "<!-- Checked 2019 Ed --> =Software Information= Transposome is a toolkit for annotation of transposable element families from unassembled sequence reads. * URL: http://sestaton.github.io/Transposome * Git: https://github.com/sestaton/T...")
  • 12:32, 13 May 2019 Ppomorsk (Talk | contribs) deleted page FSL (content was: "<!--checked2016--> == General Info == [http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/ FSL website] FSL is a comprehensive library of analysis tools for FMRI, MRI and DTI brain imaging data. It runs on Apple and PCs (both Linux, and Windows via...")
  • 12:31, 13 May 2019 Ppomorsk (Talk | contribs) deleted page VASP (content was: "{{Template:GrahamUpdate}} <big>'''VASP''': The Vienna Ab initio Simulation Package (VASP) is a computer program for atomic scale materials modelling, e.g. electronic structure calculations and quantum-mechanical molecular dynamics, from...")
  • 12:29, 13 May 2019 Ppomorsk (Talk | contribs) deleted page NETCDF (content was: "{{GrahamUpdate}} {{Software |package_name=NETCDF |package_description=An interface for array-oriented data access and a library that provides an implementation of the interface |package_idnumber=18 }} =Introduction= Provides NetCDF for...")
  • 12:27, 13 May 2019 Ppomorsk (Talk | contribs) deleted page PARPACK (content was: "#REDIRECT ARPACK-NG" (and the only contributor was "Roberpj"))
  • 12:25, 13 May 2019 Ppomorsk (Talk | contribs) deleted page MrBAYES (content was: "{{Software |package_name=MrBAYES |package_description=Bayesian estimation of phylogeny |package_idnumber=37 }} =Introduction= MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evoluti...")
  • 12:25, 13 May 2019 Ppomorsk (Talk | contribs) deleted page RLWRAP (content was: "{{Software |package_name=RLWRAP |package_description=A small utility that uses the GNU readline library |package_idnumber=124 }} =Usage on new Compute Canada clusters= This software has not yet been installed on the new clusters cedar a...")
  • 12:24, 13 May 2019 Ppomorsk (Talk | contribs) deleted page GlimmerHMM (content was: "<!--checked2016--> =3.0.1= This document explains howto compile 64bit binaries for GlimmerHMM to run on sharcnet clusters. Provided by doug@sharcnet.ca 26jun201..." (and the only contributor was "Roberpj"))
  • 12:24, 13 May 2019 Ppomorsk (Talk | contribs) deleted page GAP (content was: "{{Software |package_name=GAP |package_description=System for computational discrete algebra. |package_idnumber=139 }} =Usage on new Compute Canada clusters= This software has not yet been installed on the new clusters cedar and graham....")
  • 12:23, 13 May 2019 Ppomorsk (Talk | contribs) deleted page FFTW (content was: "{{Software |package_name=FFTW |package_description=library |package_idnumber=14 }} ==Introduction== FFTW is a C subroutine library for computing the discrete Fourier transform (DFT) in one or more dimensions, of arbitrary input size, and...")
  • 12:19, 13 May 2019 Ppomorsk (Talk | contribs) deleted page RUBY (content was: "{{Template:GrahamUpdate}} {{Software |package_name=RUBY |package_description=An open source programming language with a focus on simplicity and productivity |pack..." (and the only contributor was "Roberpj"))
  • 12:19, 13 May 2019 Ppomorsk (Talk | contribs) deleted page MGLTOOLS (content was: "{{Software |package_name=MGLTOOLS |package_description=Visualization and analysis of molecular structures. |package_idnumber=176 }} =Usage on new Compute Canada clusters= This software has not yet been installed on the new clusters ced...")
  • 12:19, 13 May 2019 Ppomorsk (Talk | contribs) deleted page LRS (content was: "{{Template:LegacyPage}} =060= * This wiki shows howto compile MPLRS following the source <i>readme</i> file. Posted by <doug@sharcnet.ca> 24sep2015. <pre> ssh iqaluk.sharcnet.ca module unload intel openmpi mkl module load intel/15.0.3...")
  • 15:26, 11 May 2019 Ppomorsk (Talk | contribs) automatically marked revision 17837 of page BIOPERL patrolled
  • 15:25, 11 May 2019 Ppomorsk (Talk | contribs) automatically marked revision 17836 of page BIOPERL patrolled
  • 15:22, 11 May 2019 Ppomorsk (Talk | contribs) automatically marked revision 17835 of page BIOPERL patrolled
  • 15:19, 11 May 2019 Ppomorsk (Talk | contribs) automatically marked revision 17834 of page BIOPERL patrolled
  • 15:17, 11 May 2019 Ppomorsk (Talk | contribs) automatically marked revision 17833 of page BIOPERL patrolled
  • 15:16, 11 May 2019 Ppomorsk (Talk | contribs) automatically marked revision 17832 of page AMICA patrolled
  • 16:30, 10 May 2019 Ppomorsk (Talk | contribs) automatically marked revision 17831 of page ABAQUS patrolled
  • 16:30, 10 May 2019 Ppomorsk (Talk | contribs) automatically marked revision 17830 of page ABAQUS patrolled
  • 16:30, 10 May 2019 Ppomorsk (Talk | contribs) restored page ABAQUS (325 revisions restored: turns out this is still needed on remaining legacy systems)
  • 16:28, 10 May 2019 Fm (Talk | contribs) changed group membership for User:Ppomorsk from (none) to administrator
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