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  • 10:11, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Using Subversion (content was: "== Why Version Control == It is common that one has several versions of the same code that evolves constantly during the course of development. Quite often most people will be versioning their files manually with numbers indicating diff...")
  • 10:08, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Parallel Java: Using MPJ Express on SHARCNET (content was: "{{Template:Outdated}} {{Template:LegacyPage}} ''Note: users should consult with one of SHARCNET's HPTC Software Analysts prior to engaging in HPC development with Java;..." (and the only contributor was "Dbm"))
  • 10:08, 2 May 2019 Ppomorsk (Talk | contribs) deleted page FPGA Accelerated Computing (content was: "{{Template:Outdated}} __TOC__ <span style="color:red">'''Note''': the system that provided this functionality (School) has since been decommissioned. We've left this information here for posteriety but at present there are no systems...")
  • 10:07, 2 May 2019 Ppomorsk (Talk | contribs) deleted page WebDAV (content was: "{{Template:GrahamUpdate}} {{Template:Outdated}} =WebDAV : Web Distributed Authoring and Versioning= The WebDAV protocol is a framework which allows a user to create, move, and delete documents on a remote server. SHARCNet now provides a...")
  • 10:07, 2 May 2019 Ppomorsk (Talk | contribs) deleted page ACML (content was: "{{Software |package_name=ACML |package_description=The AMD Core Math Library including lapack, blasé, fft |package_idnumber=4 }} '''NOTE: ACML is no longer maintained and should not be used. This page is kept for archival purposes onl...")
  • 10:07, 2 May 2019 Ppomorsk (Talk | contribs) deleted page SUPERLU (content was: "{{Template:Outdated}} {{Software |package_name=SUPERLU |package_description=Library for direct solution of large, sparse, nonsymmetric linear equation systems. |p..." (and the only contributor was "Roberpj"))
  • 10:06, 2 May 2019 Ppomorsk (Talk | contribs) deleted page ISAACS (content was: "{{Template:Outdated}} ==Compiling isaacs-2.5== Here are the steps to compile ISAACS on a visualization workstation: export IDIR=/work/razoumov/20641 # select installation directory cd $IDIR wget http://sourceforge.net/projects/isa...")
  • 10:06, 2 May 2019 Ppomorsk (Talk | contribs) deleted page SCILAB (content was: "{{Template:LegacyPage}} {{Template:Outdated}} {{Software |package_name=Scilab |package_description=A scientific software package for numerical computations |package_idnumber=68 }} =Version Selection= This section is not applicable pers...")
  • 10:06, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Astrophysics/FLASH (content was: "{{Template:Outdated}} Local SHARCNET page for the astrophysical numerical code FLASH. ==Compilation tricks== *In the FLASH version commonly used in SHARCNET (v.20050218) there is an annoying bug preventing smooth compilation of the co...")
  • 10:06, 2 May 2019 Ppomorsk (Talk | contribs) deleted page OpenMP Reduction for User Defined Data Types (content was: "== <center>OpenMP Reduction for User Defined Data Types </center>== <center>'''Nick Chepurniy, Ph.D.'''</center> <center>''' e-mail: nickc@sharcnet.ca'''</center> <ce..." (and the only contributor was "Nickc"))
  • 10:06, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Using BLAS (LAPACK) routines with QD precision (62 digits) (content was: "{{Template:GrahamUpdate}} ===<center> Using BLAS (LAPACK) routines with QD precision </center> === <center>'''Nick Chepurniy, Ph.D.'''</center> <center>''' e-mail:..." (and the only contributor was "Nickc"))
  • 10:05, 2 May 2019 Ppomorsk (Talk | contribs) deleted page MPI Reduction for User Defined Data Types (content was: "== <center>MPI Reduction for User Defined Data Types </center>== <center>'''Nick Chepurniy, Ph.D.'''</center> <center>''' e-mail: nickc@sharcnet.ca'''</center> <cente..." (and the only contributor was "Nickc"))
  • 10:05, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Solving Systems of Sparse Linear Equations (content was: "===<center>System of Linear Equations</center>=== <center>'''Nick Chepurniy, Ph.D.'''</center> <center>''' (former SHARCNET staff)'''</center> __TOC__ A system of linear equations is best represented by using the matrix notation: :''...")
  • 10:05, 2 May 2019 Ppomorsk (Talk | contribs) deleted page INTERPRETERS vs COMPILERS (content was: "{{Template:Outdated}} ==<center>INTERPRETERS vs COMPILERS </center>== <center>'''Nick Chepurniy, Ph.D.'''</center> <center>''' e-mail: nickc@sharcnet.ca'''</center> <..." (and the only contributor was "Nickc"))
  • 10:05, 2 May 2019 Ppomorsk (Talk | contribs) deleted page EIGENVALUES OF NON-SYMMETRIC MATRICES (content was: "<!--checked2016--> {{Template:Outdated}} == <center>EIGENVALUES OF NON-SYMMETRIC MATRICES </center>== <center>'''Nick Chepurniy, Ph.D.'''</center> <center>''' e-mail:..." (and the only contributor was "Nickc"))
  • 10:05, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Eigenproblem solved with PETSc SLEPc (content was: "<!--checked2016--> {{Template:Outdated}} == <center>Eigenproblem solved with PETSc_SLEPc </center>== <center>'''Nick Chepurniy, Ph.D.'''</center> <center>''' e-mail: nickc@sharcnet.ca'''</center> <center>'''HPC Consultant - SHARCNET'''...")
  • 10:04, 2 May 2019 Ppomorsk (Talk | contribs) deleted page NAG LAPACK "extras" library (content was: "{{Template:Outdated}} ==<center>NAG LAPACK "extras" library </center>== <center>'''Nick Chepurniy, Ph.D.'''</center> <center>''' e-mail: nickc@sharcnet.ca'''</center> <center>'''HPC Consultant - SHARCNET''' '''http://www.sharcnet.ca '...")
  • 10:04, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Complete FFTW Examples in C F90 OCTAVE and PETSc (content was: "{{Template:Outdated}} == <center>Complete FFTW Examples in C, F90, OCTAVE and PETSc </center>== <center>'''Nick Chepurniy, Ph.D.'''</center> <center>''' e-mail: nickc@sharcnet.ca'''</center> <center>'''HPC Consultant - SHARCNET''' '''h...")
  • 10:04, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Advanced SBVP Example in C, F90, OCTAVE and PETSc (content was: "<!--checked2016--> {{Template:Outdated}} == <center>ADVANCED SBVP Example in C, F90, OCTAVE and PETSc </center>== <center>'''Nick Chepurniy, Ph.D.'''</center> <center>''' e-mail: nickc@sharcnet.ca'''</center> <center>'''HPC Consultant -...")
  • 10:04, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Analytical Computation (content was: "<!--checked2016--> {{Template:Outdated}} ===<center>Defining Analytical Computation</center>=== <center>'''Nick Chepurniy, Ph.D.'''</center> <center>''' e-mail: nickc..." (and the only contributor was "Nickc"))
  • 10:04, 2 May 2019 Ppomorsk (Talk | contribs) deleted page RUNGE-KUTTA Tutorial (content was: "{{Template:Outdated}} ===<center> RUNGE-KUTTA for ORDINARY DIFFERENTIAL EQUATIONS </center>=== <center>'''Nick Chepurniy, Ph.D.'''</center> <center>''' e-mail: nickc@..." (and the only contributor was "Nickc"))
  • 10:03, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Digital Humanities (content was: "{{Template:Outdated}} = Introduction = This page is intended to serve as a community and information hub for our digital humanities users. It is our hope that interested users and staff share tips and tricks, information about what th...")
  • 10:03, 2 May 2019 Ppomorsk (Talk | contribs) deleted page A Big Bridge: High Performance Computing and the Humanities (content was: "{{Template:Outdated}} This is the abstract of a paper to be presented at the 2008 Congress of the Humanities and Social Sciences Authors: * Geoffrey Rockwell - Associate Professor, Department of Communication Studies and Multimedia, M...")
  • 10:03, 2 May 2019 Ppomorsk (Talk | contribs) deleted page ATLAS (content was: "<!--checked2016--> {{Template:Outdated}} {{Software |package_name=ATLAS |package_description=Automatically Tuned Linear Algebra Software |package_idnumber=3 }} <b><font color=red>IMPORTANT NOTICE:</font> ATLAS will removed from all SHAR...")
  • 10:03, 2 May 2019 Ppomorsk (Talk | contribs) deleted page GSL (content was: "{{Template:GrahamUpdate}} <!--checked2016--> {{Template:Outdated}} {{Software |package_name=GSL |package_description=Mathematical routines to C/C++ programmers |package_idnumber=31 }} ==Examples== ===Example 1: Random Numbers from a Po...")
  • 10:02, 2 May 2019 Ppomorsk (Talk | contribs) deleted page MPICH2 (content was: "<!--checked2016--> {{Template:Outdated}} {{Software |package_name=MPICH2 |package_description=To provide an MPI implementation |package_idnumber=52 }} Mpich2 is not installed on sharcnet please use openmpi instead. <br> <br> <b>Legacy Us...")
  • 10:02, 2 May 2019 Ppomorsk (Talk | contribs) deleted page SPAI (content was: "{{Template:Outdated}} [http://www.computational.unibas.ch/software/spai/spaidoc.html SPAI – SParse Approximate Inverse Preconditioner] (MPI) Warning: the above link is dead. You can still find the source file (v.3.2) in my home direc...")
  • 10:01, 2 May 2019 Ppomorsk (Talk | contribs) deleted page TORQUE (content was: "{{Software |package_name=TORQUE |package_description=Resource manager for SHARCNET clusters |package_idnumber=92 }} <b><U>NATIVE TORQUE COMMANDS (all T&M clusters)</..." (and the only contributor was "Isaac"))
  • 09:59, 2 May 2019 Ppomorsk (Talk | contribs) deleted page IPM (content was: "{{Template:GrahamUpdate}} {{Software |package_name=IPM |package_description=Profiling library for parallel codes |package_idnumber=125 }} =Introduction= IPM (Integrated Performance Monitoring) is a portable profiling infrastructure for...")
  • 09:59, 2 May 2019 Ppomorsk (Talk | contribs) deleted page PATHSCALE (content was: "{{Template:LegacyPage}} {{Software |package_name=Pathscale |package_description=the Pathscale Compiler Suite |package_idnumber=44 }} =Introduction= Pathscale is a compiler. Presently SHARCNET provides version 4 of the compiler. It u...")
  • 09:59, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Quantifying the Importance of Horizontal Gene Transfer for Bacterial Genome Evolution (content was: "This project was conducted in the first round of SHARCNET's dedicated programming support competition. It mainly concerned developing a program that reads in the sequences of all genes present o...")
  • 09:58, 2 May 2019 Ppomorsk (Talk | contribs) deleted page ROOT (content was: "{{Template:Outdated}} ===about=== [http://root.cern.ch/drupal/ ROOT] ''The ROOT system provides a set of OO frameworks with all the functionality needed to handle and analyze large amounts of data in a very efficient way.'' ===instal...")
  • 09:58, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Unsupported Software Documentation (content was: "#REDIRECT Unsupported Software" (and the only contributor was "Roberpj"))
  • 09:57, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Software Resources (content was: "#REDIRECT Unsupported Software Documentation" (and the only contributor was "Merz"))
  • 09:56, 2 May 2019 Ppomorsk (Talk | contribs) deleted page UCSC Kent Utilities (content was: "{{Template:LegacyPage}} ==Overview== The "UCSC Kent Utilities" is a collection of utilities for performing genomics and related work that was used to build the web based [http://genome.ucsc.edu/cgi-bin/hgTracks?org=human UCSC Genome Bro...")
  • 09:54, 2 May 2019 Ppomorsk (Talk | contribs) deleted page MAFFT (content was: "{{Template:Outdated}} {{Template:LegacyPage}} '''Update November 2014''': These instructions were written for the older SHARCNET environment. It should be possible to build MAFFT for the present SHARCNET environment without any deviati...")
  • 09:54, 2 May 2019 Ppomorsk (Talk | contribs) deleted page LinBox (content was: "{{Template:Outdated}} {{Template:GrahamUpdate}} '''Update November 2014''': These instructions are from 2010 and were created for the SHARCNET environment at that time. It should be possible to install this software on the newer operat...")
  • 09:54, 2 May 2019 Ppomorsk (Talk | contribs) deleted page KmerGenie (content was: "=kmergenie-1.6741= Built successfully on orca under centos6.4 using the system GCC, see [https://www.sharcnet.ca/my/problems/ticket/23952 ticket 23952]. ssh orca.sharcnet.ca wget http://kmergenie.bx.psu.edu/kmergenie-1.6741.tar.gz t...")
  • 09:54, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Vi and vim configuration (content was: "This page is now included in the SHARCNET Vim Documentation page at: VIM#Configuration <!--checked2015-->")
  • 09:54, 2 May 2019 Ppomorsk (Talk | contribs) deleted page VIM (content was: "{{Software |package_name=VIM |package_description=Text editor |package_idnumber=100 }} =Introduction= The vim console text editor can be started by typing <i>vim</i>. A graphical version is also available on most Sharcnet systems: <...")
  • 09:53, 2 May 2019 Ppomorsk (Talk | contribs) deleted page OwnCloud (content was: "{{LegacyPage}} <div class="alert-info" style="margin-bottom: 10pt"> <div style="float:left; vertical-align:top; text-align: center; font-weight:bold; font-size: 3em; color: white; background-color: red; height: 0.8em; width: 1.2em; pad...")
  • 09:53, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Enzo (content was: "{{Template:Outdated}} =Introduction= Enzo is a parallel adaptive mesh refinement (AMR) grid-based code for simulating structure formation in the Universe. It..." (and the only contributor was "Razoumov"))
  • 09:52, 2 May 2019 Ppomorsk (Talk | contribs) deleted page HOOMD-blue (content was: "'''HOOMD-blue''' is a general-purpose particle simulation toolkit. It scales from a single CPU core to thousands of GPUs. =Install from git= Tested on Compute Canada cluster "graham" November 2017 by <ppomorsk@sharcnet.ca> <br> modul...")
  • 09:52, 2 May 2019 Ppomorsk (Talk | contribs) deleted page BINUTILS (content was: "{{Template:Outdated}} {{Software |package_name=BINUTILS |package_description=A collection of programming tools for the manipulation of object code |package_idnumber=114 }} =Intrduction= To load the most recent binutils module do: <pre...")
  • 09:52, 2 May 2019 Ppomorsk (Talk | contribs) deleted page COMPILE (content was: "<!--checked2016--> {{Template:Outdated}} {{Software |package_name=COMPILE |package_description=Provide "wrappers" that permit generic compilation |package_idnumber=129 }} compile is loaded by default in the SHARCNET user-environment/1.0...")
  • 09:52, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Cutadapt (content was: "{{template:LegacyPage}} read more about this package here: https://cutadapt.readthedocs.org/en/stable/ To install on kraken in my home directory I'd do: ssh kraken.sharcnet.ca module load python wget http://cutadapt.googlecode.com...")
  • 09:51, 2 May 2019 Ppomorsk (Talk | contribs) deleted page GRAPHVIZ (content was: "{{Template:GrahamUpdate}} {{Template:Outdated}} {{Software |package_name=GRAPHVIZ |package_description=Graph visualization software |package_idnumber=98 }} =Version Selection= Please refer to the documentation [http://www.graphviz.org/...")
  • 09:51, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Geneious (content was: "{{Template:LegacyPage}} This software was test installed for a group on the SHARCNET vdi-centos6 host in March 2015. There is a trial license which was not configured at the time. Please email help@sharcnet.ca if you need help setting...")
  • 09:50, 2 May 2019 Ppomorsk (Talk | contribs) deleted page Glossary of Terms (content was: "{{Ancient|27402}} ===Barrier=== A synchronization point in parallel code where two or more threads must both reach before continuing. ===IDE=== Integrated Develop..." (and the only contributor was "Edward"))
  • 09:50, 2 May 2019 Ppomorsk (Talk | contribs) deleted page LDWRAPPER (content was: "{{LegacyPage}} <!--checked2016--> {{Software |package_name=LDWRAPPER |package_description=Wrapper for the sharcnet default centos6 module environment to ensure LD_RUN_PATH is used. |package_idnumber=165 }} =Introduction= The ldwrappe...")
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